Publications

Arslan-Ergul, A. et al., (2016). Short-term dietary restriction in old zebrafish changes cell senescence mechanisms. Neuroscience 334: 64-75.

Manassi, M, Lonchampt, S, Clarke, A, & Herzog, MH (2016). “What Crowding Can Tell Us About Object Representations.” Vision Research, 16(3):35, 1-13.

Pamir, Z., Boyaci, H. (2016). “Context-dependent Lightness Affects Perceived Contrast.” Vision Research 124: 24-33. doi: 10.1016/j.visres.2016.06.003.

Khatibi, A. (2016). Be precise and suffer less pain! A comment on “A brief intervention utilising visual feedback reduces pain and enhances tactile acuity in CLBP patients.” Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.3233/BMR-160664

Akbari, F. et al. (2016). Incorporating Family Function into chronic pain disability: the role of catastrophizing. http://dx.doi.org/10.1155/2016/6838596

Gulseren, G., et al. (2015). “Alkaline Phosphatase-Mimicking Peptide Nanofibers for Osteogenic Differentiation.” Biomacromolecules 16(7): 2198-2208.

Uzunalli, G., et al. (2015). “Improving pancreatic islet in vitro functionality and transplantation efficiency by using heparin mimetic peptide nanofiber gels.” Acta biomaterialia.

Unal Gulsuner, H., et al. (2015). “Multi-Domain Short Peptide Molecules for In situ Synthesis and Biofunctionalization of Gold Nanoparticles for Integrin-Targeted Cell Uptake.” ACS applied materials & interfaces.

Mumcuoglu, D., et al. (2015). “Oligonucleotide Delivery with Cell Surface Binding and Cell Penetrating Peptide Amphiphile Nanospheres.” Molecular pharmaceutics 12(5): 1584-1591.

Gulsuner, H. U., et al. (2015). “Reply to Tzoulis et al.: Genetic and clinical heterogeneity of essential tremor.” Proceedings of the National Academy of Sciences 112(18): E2269-E2269.

Goktas, M., et al. (2015). “Self-Assembled Peptide Amphiphile Nanofibers and PEG Composite Hydrogels as Tunable ECM Mimetic Microenvironment.” Biomacromolecules 16(4): 1247-1258.

Unal Gulsuner, H., et al. (2015). “Osteoselection supported by phase separated polymer blend films.” Journal of Biomedical Materials Research Part A 103(1): 154-161.

Kafaligonul, H., et al. (2015). “Feedforward and feedback processes in vision.” Frontiers in psychology 6.

Unal Gulsuner, H., et al. (2015). “Osteoselection supported by phase separated polymer blend films.” Journal of Biomedical Materials Research Part A 103(1): 154-161.

Arslan, E., et al. (2014). “Bioactive supramolecular peptide nanofibers for regenerative medicine.” Advanced healthcare materials 3(9): 1357-1376.

Aydın Tekdaş, D., et al. (2014). “Design of a Gd‐DOTA‐Phthalocyanine Conjugate Combining MRI Contrast Imaging and Photosensitization Properties as a Potential Molecular Theranostic.” Photochemistry and photobiology 90(6): 1376-1386.

Ceylan, H., et al. (2014). “Bone-like mineral nucleating peptide nanofibers induce differentiation of human mesenchymal stem cells into mature osteoblasts.” Biomacromolecules 15(7): 2407-2418.

Gengec, N. A., et al. (2014). “Selective adsorption of L1210 leukemia cells/human leukocytes on micropatterned surfaces prepared from polystyrene/polypropylene-polyethylene blends.” Colloids and Surfaces B: Biointerfaces 113: 403-411.

Gulsuner, H. U., et al. (2014). “Mitochondrial serine protease HTRA2 p. G399S in a kindred with essential tremor and Parkinson disease.” Proceedings of the National Academy of Sciences 111(51): 18285-18290.

Mammadov, B., et al. (2014). Extracellular matrix mimetic peptide scaffolds for neural stem cell culture and differentiation. Biomimetics and Stem Cells, Springer: 131-148.

Sever, M., et al. (2014). “Tenascin-C mimetic peptide nanofibers direct stem cell differentiation to osteogenic lineage.” Biomacromolecules 15(12): 4480-4487.

Uzunalli, G., et al. (2014). “Bioactive self-assembled peptide nanofibers for corneal stroma regeneration.” Acta biomaterialia 10(3): 1156-1166.

Arslan-Ergul, A. and M. M. Adams (2014). “Gene expression changes in aging Zebrafish (Danio rerio) brains are sexually dimorphic.” BMC neuroscience 15(1): 29.
Kafaligonul, H. (2014). “Vision: A Systems Neuroscience Perspective.” The Journal of Neurobehavioral Sciences 1(2): 21-26.

Molina, D. P., et al. (2013). “Growth hormone and insulin-like growth factor-I alter hippocampal excitatory synaptic transmission in young and old rats.” Age 35(5): 1575-1587.

Ilay, A., et al. (2013). “Novel object recognition is not affected by age despite age-related brain changes.” World Journal of Neuroscience 2013.

Konkle, J. J., et al. (2013). “Twenty-fold acceleration of 3D projection reconstruction MPI.” Biomedizinische Technik/Biomedical Engineering 58(6): 565-576.

Karampinos, D. C., et al. (2013). “Diffusion tensor imaging and T2 relaxometry of bilateral lumbar nerve roots: feasibility of in‐plane imaging.” NMR in biomedicine 26(6): 630-637.

Saritas, E. U., et al. (2013). “Magnetostimulation limits in magnetic particle imaging.” Medical Imaging, IEEE Transactions on 32(9): 1600-1610.

Saritas, E. U., et al. (2013). “Magnetic particle imaging (MPI) for NMR and MRI researchers.” Journal of Magnetic Resonance 229: 116-126.

Lu, K., et al. (2013). “Linearity and shift invariance for quantitative magnetic particle imaging.” Medical Imaging, IEEE Transactions on 32(9): 1565-1575.

Estrada, V., et al. (2013). “Neural ECM mimetics.” Progress in brain research 214: 391-413.

Ayas, S., et al. (2013). “Label-free nanometer-resolution imaging of biological architectures through surface enhanced raman scattering.” Scientific reports 3.

Ceylan, H., et al. (2013). “Size-controlled conformal nanofabrication of biotemplated three-dimensional TiO2 and ZnO nanonetworks.” Scientific reports 3.

Huri, E., et al. (2013). “Generation of Chimeric “ABS Nanohemostat” Complex and Comparing Its Histomorphological In Vivo Effects to the Traditional Ankaferd Hemostat in Controlled Experimental Partial Nephrectomy Model.” International journal of biomaterials 2013.

Kocabey, S., et al. (2013). “Glycosaminoglycan mimetic peptide nanofibers promote mineralization by osteogenic cells.” Acta biomaterialia 9(11): 9075-9085.

Mammadov, B., et al. (2013). “Neural differentiation on synthetic scaffold materials.” Biomaterials Science 1(11): 1119-1137.

Sardan, M., et al. (2013). “Cell penetrating peptide amphiphile integrated liposomal systems for enhanced delivery of anticancer drugs to tumor cells.” Faraday discussions 166: 269-283.

Tekinay, A. B., et al. (2013). “Peptide nanofibers for controlled growth factor release.” Therapeutic delivery 4(6): 651-654.

Ustun, S., et al. (2013). Peptide Nanofiber Scaffolds for Multipotent Stromal Cell Culturing. Stem Cell Nanotechnology, Springer: 61-76.Ceylan, H., et al. (2013). “Mussel Inspired Dynamic Cross‐Linking of Self‐Healing Peptide Nanofiber Network.” Advanced Functional Materials 23(16): 2081-2090.

Ustun, S., et al. (2012). “Growth and differentiation of prechondrogenic cells on bioactive self-assembled peptide nanofibers.” Biomacromolecules 14(1): 17-26.

Ceylan, H., et al. (2012). “Surface-adhesive and osteogenic self-assembled peptide nanofibers for bioinspired functionalization of titanium surfaces.” Soft Matter 8(14): 3929-3937.

Cinar, G., et al. (2012). “Amyloid inspired self-assembled Peptide nanofibers.” Biomacromolecules 13(10): 3377-3387.

Mammadov, B., et al. (2012). “Cooperative effect of heparan sulfate and laminin mimetic peptide nanofibers on the promotion of neurite outgrowth.” Acta biomaterialia 8(6): 2077-2086.

Mammadov, R., et al. (2012). “Growth factor binding on heparin mimetic peptide nanofibers.” Biomacromolecules 13(10): 3311-3319.

Tombuloglu, A., et al. (2012). “Materials for Articular Cartilage Regeneration.” Recent Patents on Biomedical Engineering 5(3): 187-199.

Molina, D. P., et al. (2012). “Growth hormone modulates hippocampal excitatory synaptic transmission and plasticity in old rats.” Neurobiology of aging 33(9): 1938-1949.

Goodwill, P. W., et al. (2012). “Projection x-space magnetic particle imaging.” Medical Imaging, IEEE Transactions on 31(5): 1076-1085.

Kafaligonul, H. and G. R. Stoner (2012). “Static sound timing alters sensitivity to low-level visual motion.” Journal of vision 12(11): 2.

Goodwill, P. W., et al. (2012). “X‐space MPI: magnetic nanoparticles for safe medical imaging.” Advanced materials 24(28): 3870-3877.

Mammadov, R., et al. (2012). “Microscopic characterization of peptide nanostructures.” Micron 43(2): 69-84.

Bulut, S., et al. (2011). “Slow release and delivery of antisense oligonucleotide drug by self-assembled peptide amphiphile nanofibers.” Biomacromolecules 12(8): 3007-3014.

Ceylan, H., et al. (2011). “Selective adhesion and growth of vascular endothelial cells on bioactive peptide nanofiber functionalized stainless steel surface.” Biomaterials 32(34): 8797-8805.

Mammadov, R., et al. (2011). “Heparin mimetic peptide nanofibers promote angiogenesis.” Biomacromolecules 12(10): 3508-3519.

Bulut, S., et al. (2011). “Slow release and delivery of antisense oligonucleotide drug by self-assembled peptide amphiphile nanofibers.” Biomacromolecules 12(8): 3007-3014.
Dagdas, Y. S., et al. (2011). “Nanomechanical characterization by double-pass force–distance mapping.” Nanotechnology 22(29): 295704.

Mammadov, R., et al. (2011). “Heparin mimetic peptide nanofibers promote angiogenesis.” Biomacromolecules 12(10): 3508-3519.
Zaharchuk, G., et al. (2011). “Reduced field-of-view diffusion imaging of the human spinal cord: comparison with conventional single-shot echo-planar imaging.” American Journal of Neuroradiology 32(5): 813-820.

Saritas, E. U., et al. (2011). “SNR dependence of optimal parameters for apparent diffusion coefficient measurements.” Medical Imaging, IEEE Transactions on 30(2): 424-437.

Zaharchuk, G., et al. (2011). “Reduced field-of-view diffusion imaging of the human spinal cord: comparison with conventional single-shot echo-planar imaging.” American Journal of Neuroradiology 32(5): 813-820.

Adams, M. M., et al. (2010). “Age-related synapse loss in hippocampal CA3 is not reversed by caloric restriction.” Neuroscience 171(2): 373-382.

Saritas, E., et al. (2010). “Hadamard slice-encoding for reduced-FOV single-shot diffusion-weighted EPI.” Proceedings of the International Society of Magnetic Resonance in Medicine. Stockholm, Sweden: International Society of Magnetic Resonance in Medicine: 189.

Kafaligonul, H. and G. R. Stoner (2010). “Auditory modulation of visual apparent motion with short spatial and temporal intervals.” Journal of vision 10(12): 31.

Bedell, H. E. and G. Purushothaman (2010). “Perceptual asynchronies and the dual-channel differential latency hypothesis.” Space and Time in Perception and Action: 379.

Adams, M. M., et al. (2009). “Stability of local brain levels of insulin-like growth factor-I in two well-characterized models of decreased plasma IGF-I.” Growth Factors 27(3): 181-188.

Kafaligönül, H., et al. (2009). “Effects of contrast polarity in paracontrast masking.” Attention, Perception, & Psychophysics 71(7): 1576-1587.

Breitmeyer, B. G., et al. (2008). “Metacontrast masking and stimulus contrast polarity.” Vision research 48(23): 2433-2438.

Lee, J. H., et al. (2008). “Full‐brain coverage and high‐resolution imaging capabilities of passband b‐SSFP fMRI at 3T.” Magnetic Resonance in Medicine 59(5): 1099-1110.

Yildirim, M., et al. (2008). “Estrogen and aging affect synaptic distribution of phosphorylated LIM kinase (pLIMK) in CA1 region of female rat hippocampus.” Neuroscience 152(2): 360-370.

Shi, L., et al. (2007). “Caloric restriction eliminates the aging-related decline in NMDA and AMPA receptor subunits in the rat hippocampus and induces homeostasis.” Experimental neurology 206(1): 70-79.

Shi, L., et al. (2006). “Spatial learning and memory deficits after whole-brain irradiation are associated with changes in NMDA receptor subunits in the hippocampus.” Radiation research 166(6): 892-899.

Breitmeyer, B. G., et al. (2006). “Meta-and paracontrast reveal differences between contour-and brightness-processing mechanisms.” Vision research 46(17): 2645-2658.

Ramsey, M. M., et al. (2005). “Functional characterization of des-IGF-1 action at excitatory synapses in the CA1 region of rat hippocampus.” Journal of neurophysiology 94(1): 247-254.